TAN Siqi,HUANG Jiajia,ZENG Yuyu,et al.Study on the Molecular Mechanism of Sawdust Degradability Discrepancy in Stropharia rugosoannulata Strains[J].Northern Horticulture,2025,(21):16-26.[doi:10.11937/bfyy.20251333]
大球盖菇菌株木屑降解能力差异的分子机制研究
- Title:
- Study on the Molecular Mechanism of Sawdust Degradability Discrepancy in Stropharia rugosoannulata Strains
- 文章编号:
- 1001-0009(2025)21-0016-11
- Keywords:
- Stropharia rugosoannulata; lignin degradation; enzyme activity assays; transcriptome analysis; molecular mechanism
- 分类号:
- S 646
- 文献标志码:
- A
- 摘要:
- 以降解能力强大球盖菇菌株SA44和降解能力弱菌株SA07为试材,采用酶活测定和转录组分析方法,研究其木屑降解能力差异的分子机制,以期为选育出高产木质素降解酶的菌株提供参考依据。结果表明:SA44菌株的漆酶和过氧化物酶活性显著高于SA07菌株,这与其较高的木屑降解能力一致。在2个菌株间,差异表达基因主要富集在碳水化合物活性酶家族,涉及氧化酶活性、糖苷水解酶功能及解毒蛋白编码。SA44菌株中与木质素修饰和降解相关的辅助酶、氧化酶、糖苷水解酶以及解毒蛋白的基因表达水平显著上调,这些基因的协同作用可能增强了木屑降解效率。综上,关键酶基因表达的差异、辅助酶系统的协同作用以及胞外酶系统的组成与活性差异,是大球盖菇菌株木屑降解能力存在差异的原因,进一步构建了相关的分子机制模型。
- Abstract:
- Taking the strong degradability strain SA44 and the poor one SA07 of Stropharia rugosoannulata as the test materials,enzyme activity determination and transcriptome analysis were used to investigate the molecular mechanisms underlying the differences in their sawdust degradation abilities,in order to provide reference for the selection of S.rugosoannulata strains with high-yield lignin degrading enzyme.The results showed that the laccase and peroxidase activities of the strain SA44 were significantly higher than those of SA07,consistent with its enhanced sawdust degradability.Between the two strains,the differentially expressed genes were predominantly enriched in the carbohydrate-active enzyme families,which mainly encode genes involved in oxidase activities,glycoside hydrolase functions,and detoxification.In the strain SA44,the expression levels of genes related to lignin modification and degradation,including those encoding auxiliary enzymes,oxidases,glycoside hydrolases,and detoxification proteins,were significantly upregulated.The synergistic action of these genes likely enhanced the degradation efficiency of sawdust.In summary,the differences in the expression of key enzyme genes,the synergistic effect of auxiliary enzyme systems,and the differences in the composition and activity of extracellular enzyme systems were the reasons for the differences in sawdust degradability discrepancy between the two S.rugosoannulata strains.Further,a relevant molecular mechanism model was constructed here.
参考文献/References:
[1]李忠正.可再生生物质资源:木质素的研究[J].南京林业大学学报(自然科学版),2012,36(1):1-7.[2]XU E,XIE F,LIU T,et al.Photocatalytic,oxidative cleavage of C-C bond in lignin models and native lignin[J].Chemistry,2024,30(24):e202304209.[3]崔永强,林燕,华鑫怡,等.木质纤维素为原料的燃料乙醇发酵技术研究进展[J].化工进展,2010,29(10):1868-1876.[4]曹炎鑫.木质纤维素生产燃料乙醇的关键技术研究现状.水能经济,2016(6):2.[5]LI X,CHEN Y,NIELSEN J.Harnessing xylose pathways for biofuels production[J].Current Opinionin Biotechnology,2019,57:56-65.[6]ZHANG W,DIAO C,WANG L.Degradation of lignin in different lignocellulosic biomass by steam explosion combined with microbial consortium treatment[J].Biotechnology for Biofuels and Bioproducts,2023,16(1):55.[7]LONG B,ZHANG F,DAI S Y,et al.Engineering strategies to optimize lignocellulosic biorefineries[J].Nature Reviews Bioengineering,2024,3(3):230-244.[8]HAQ I,MAZUMDER P,KALAMDHAD A S.Recent advances in removal of lignin from paper industry wastewater and its industrial applications:A review[J].Bioresource Technology,2020,312:123636.[9]SUMRANWANICH T,AMOSU E,CHANKHAMHAENG-DECHA S,et al.Evaluating lignin degradation under limited oxygen conditions by bacterial isolates from forest soil[J].Scientific Reports,2024(14):13350.[10]LI N,AN X,XIAO X,et al.Recent advances in the treatment of lignin in papermaking wastewater[J].World Journal of Microbiology and Biotechnology,2022,38(7):116.[11]LI C,XU S.Edible mushroom industry in China:current state and perspectives[J].Applied Microbiology and Biotechnology,2022,106(11):3949-3955.[12]HUANG L,HE C,SI C,et al.Nutritional,bioactive,and flavor components of giant Stropharia (Stropharia rugoso-annulata):A review[J].Journal of Fungi,2023,9(8):792.[13]闵露娟,邓涛,狄岚,等.大球盖菇研究进展[J].南方林业科学,2024,52(4):65-72.[14]POZDNYAKOVA N,SCHLOSSER D,DUBROVSKAYA E,et al.The degradative activity and adaptation potential of the litter-decomposing fungus Stropharia rugosoannulata[J].World Journal of Microbiology and Biotechnology,2018,34(9):133.[15]CASTELLET-ROVIRA F,LUCAS D,VILLAGRASA M,et al.Stropharia rugosoannulata and Gymnopilus luteofolius:Promising fungal species for pharmaceutical biodegradation in contaminated water[J].Journal of Environmental Management,2018,207:396-404.[16]龚曦珊,陈青君,张国庆,等.硒对大球盖菇菌丝生长、子实体农艺性状和营养品质的影响.微生物学通报,2023,50(10):4522-4532.[17]SCHOENHERR S,EBRAHIMI M,CZERMAK P.Lignin degradation processes and the purification of valuable products[M].London:Intech Open,2018.[18]ANDLAR M,REZIC T,MARDETKO N,et al.Lignocellulose degradation:An overview of fungi and fungal enzymes involved in lignocellulose degradation[J].Engineering in Life Sciences,2018,18(11):768-778.[19]EL-GENDI H,SALEH A K,BADIERAH R,et al.A comprehensive insight into fungal enzymes:Structure,classification,and their role in mankind′s challenges[J].Journal of Fungi,2021,8(1):23.[20]孙波,赵会长,周洪英,等.大球盖菇“秋种冬收”优质高效栽培技术[J].北方园艺,2024(21):149-153.[21]方释慧.大球盖菇液体培养条件优化及栽培技术[M].哈尔滨:东北林业大学,2017.[22]任纪帆,朱静娴,王庆佶,等.大球盖菇“山农球盖3号”品种的选育[J].菌物学报,2020,39(6):977-982.[23]MENON V,RAO M.Trends in bioconversion of lignocellulose:Biofuels,platform chemicals &biorefinery concept[J].Progress in Energy and Combustion Science,2012,38(4):522-550.[24]LIU G Y,HE A L,DU J,et al.2021.Effect of stropharia rugosoannulata maize rotation on straw degradation,soil physicochemical properties,yield and economic benefit of crops[J].Journal of Henan Agricultural Sciences,2021,50(10):60-68.[25]LI S,ZHAO S,HU C,et al.Whole genome sequence of an edible mushroom Stropharia rugosoannulata (Daqiugaigu)[J].Journal of Fungi,2022,8(2):99.[26]YANG Y,MENG G,NI S,et al.Genomic analysis of Stropharia rugosoannulatareveals its nutritional strategy and application potential in bioremediation[J].Journal of Fungi,2022,8(2):162.[27]LUO Q,GUO T,SUN Z X,et al.Biological basis and bioactive components of Stropharia rugosoannulata and its application[J].Microbiology China,2023,50(6):2709-2720.[28]GONG W,ZENG Y,LI X,et al.Molecular profiling of rice straw degradability discrepancy in Stropharia rugosoannulatacore germplasm[J].Journal of Agricultural and Food Chemistry,2024,72(45):25379-25390.[29]苏世彦.真菌培养基原理分析与应用[J].食品科学,1994,15(5):45-52.[30]MCGONIGLE T P,MILLER M H,EVANS D G,et al.A new method which gives an objective measure of colonization of roots by vesicular-arbuscular mycorrhizal fungi[J].New Phytologist,1990,115(3):495-501.[31]张芳芳,张桐,戴丹,等.高效木质素降解菌的筛选及其对玉米秸秆的降解效果[J].菌物学报,2021,40(7):1869-1880.[32]王宜磊,朱陶,邓振旭.愈创木酚法快速筛选漆酶产生菌[J].生物技术,2007,17(2):40-42.[33]孙江慧.几株食用菌对秸秆木质纤维素降解能力的研究[D].南京:南京农业大学,2012.[34]BOLGER A M,LOHSE M,USADEL B.Trimmomatic:Aflexible trimmer for Illumina sequence data[J].Bioinformatics,2014,30(15):2114-2120.[35]KIM D,LANGMEAD B,SALZBERG S L.HISAT:Afast spliced aligner with low memory requirements[J].Nature Methods,2015,12(4):357-360.[36]GUO M,MA X,ZHOU Y,et al.Genome sequencing highlights the plant cell wall degrading capacity of edible mushroom Stropharia rugosoannulata[J].Journal of Microbiology,2023,61(1):83-93.[37]ANDERS S,PYL P T,HUBER W.HTSeq:A Python framework to work with high-throughput sequencing data[J].Bioinformatics,2015,31(2):166-169.[38]CHEN C,CHEN H,ZHANG Y,et al.TBtools:An integrative toolkit developed for interactive analyses of big biological data[J].Molecular Plant,2020,13(8):1194-1202.[39]ROBINSON M D,MCCARTHY D J,SMYTH G K.edgeR:A Bioconductor package for differential expression analysis of digital gene expression data[J].Bioinformatics,2010,26(1):139-140.[40]YU G,WANG L G,HAN Y,et al.clusterProfiler:An R package for comparing biological themes among gene clusters[J].Omics,2012,16(5):284-287.[41]LANGFELDER P,HORVATH S.WGCNA:An R package for weighted correlation network analysis[J].BMC Bioinformatics,2008,9:559.[42]WANG Q,GUO M,XU R,et al.Transcriptional changes on blight fruiting body of Flammulina velutipes caused by two new bacterial pathogens[J].Frontiers in Microbiology,2019(10):2845.[43]SHANNON P,MARKIEL A,OZIER O,et al.Cytoscape:Asoftware environment for integrated models of biomolecular interaction networks[J].Genome Research,2003,13(11):2498-2504.[44]徐乐,何宏泰,刘浩然,等.大豆Hsp20基因家族生物信息学分析及高温高湿胁迫响应的分析[J].大豆科学,2023,42(5):565-578.[45]李兵,刘柳,单婷婷,等.蜜环菌糖苷水解酶家族基因在菌索与菌丝间的差异表达分析[J].菌物学报,2021,40(6):373-383,1369-1379.[46]曹雨影,李艳,张莹,等.海藻糖对香菇多糖代谢及关键酶基因表达的影响[J].菌物学报,2023,42(11):2244-2256.[47]张根,陈宝锐,陈涛,等.农作物秸秆木质纤维素生物降解酶及降解菌的研究进展[J].农学学报,2023,13(2):24-32.
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备注/Memo
第一作者简介:谭思琪(2001-),女,硕士研究生,研究方向为食用菌组学。E-mail:tansiqi@webmail.hzau.edu.cn.责任作者:肖扬(1979-),男,博士,教授,现主要从事食用真菌学等研究工作。E-mail:xiaoyang@mail.hzau.edu.cn.基金项目:国家食用菌产业技术体系资助项目(CARS-20);湖北省食用菌产业技术体系资助项目(2023HBSTX4-09)。收稿日期:2025-04-09