ZHANG Li-peng,LIU Bo,CHEN Cheng-bin.Research Advances in Plant Chromosomal Molecular Karyotyping[J].Northern Horticulture,2014,38(08):179-183.
植物染色体分子核型技术研究进展
- Title:
- Research Advances in Plant Chromosomal Molecular Karyotyping
- 文章编号:
- 1001-0009(2014)08-0179-05
- Keywords:
- molecular karyotype; chromosome; fluorescence in situ hybridization (FISH); fluorochrome banding; repetitive sequences
- 分类号:
- Q 343.2
- 文献标志码:
- A
- 摘要:
- 近年来,荧光原位杂交及荧光分带等细胞遗传学技术的发展,提供了更多的染色体信息,使科研工作者能从更精细水平上对植物进行核型分析,更好地分辨基因组内各条非同源染色体,以及进行分化程度小的基因组间的比较。这种核型分析技术为研究染色体行为和变异,单个基因及转基因在基因组内的定位等开辟了新的途径。现在阐述以多色荧光原位杂交(mFISH)、基因组原位杂交(GISH)、染色体绘染(chromosome painting,CP)等荧光原位杂交为基础的染色体分子核型基础上,分析了荧光分带技术(fluorochrome banding)在分子核型中的应用,并对染色体分子核型技术在植物基因组功能研究领域的应用进行了展望。
- Abstract:
- Recent developments on multiple cytogenetic techniques such as fluorescence in situ hybridization (FISH) and fluorochrome banding,provide us more information on chromosomes,which enable detailed karyotype analysis of plants.As chromosome marks,signals showed by multicolor FISH using different repetitive sequences as probes and/or fluorochrome bands,improves our ability to distinguish each of the nonhomologous chromosomes within a genome,and to distinguish slightly diverged genomes from each other.Such karyotype analysis opens new avenues for the study of chromosomal variation and behavior,as well as for the localization of individual genes and transgenes to genomic position.In this paper,the multicolor fluorescence in situ hybridization (mFISH),genomic in situ hybridization (GISH),chromosome painting dye (chromosome painting,CP),such as fluorescence in situ hybridization-based molecular chromosome karyotype were described,based on the analysis of the fluorescence banding techniques (fluorochrome banding) applications in molecular karyotype and molecular karyotype and chromosome technology in the field of plant genomics functional studies were discussed.
参考文献/References:
[1]Brown G R,Carlson J E.Molecular cytogenetics of the genes encoding 18S-58S-26S rRNA and 5S rRNA in two species of spruce (Picea)[J].Theor?Appl Genet,1997,95:1-9. [2]刁英.染色体核型研究的方法及应用[J].渝西学院学报,2004(3):55-58. [3]Langer?P R,Waldrop A A,Ward D C.Enzymatic synthesis of biotin-labeled?polynucleotides:novel nucleic acid affinity probes[J].Proc Natl Acad Sci USA,1981,78:6633-6637. [4]Wu Q,Liu F,Li S H,et al.Uniqueness of the Gossypium mustelinum?enome revealed by GISH and 45S rDNA FISH[J].Journal of Integrative Plant Biology,2013,55(7):654-662. [5]Pizzaia D,Oliveira V M,Martins A R,et al.Karyotype characterization reveals active 45S rDNA sites located on chromosome termini in Smilax rufescens (Smilacaceae)[J].Genet Mol Res,2013,12(2):1303-1310. [6]Németh?A V,Dudits D,Molnár-Láng M,et al.Molecular?cytogenetic characterisation of Salix viminalis?L.using repetitive DNA sequences[J].J Appl Genetics,2013,54:265-269. [7]Sultana S,Lee S H,Bang J W,et al.Physical mapping of rRNA gene loci and inter-specific relationships in wild Lilium?distributed in Korea[J].J Plant Biol,2013,53:433-443. [8]Dou Q W,Chen Z G,Liu Y A,et al.High frequency of karyotype variation revealed by sequential FISH and GISH in plateau perennial grass forage Elymus nutans[J].Breeding Science,2009,59:651-656. [9]Liu B,Qi L,Chen R.Multicolor fluorescence in situ hybridization with combinatorial labeling probes enables a detailed karyotype analysis of Larix principis-rupprechtii[J].Biological Research,2007,40:23-28. [10]Liu B,Zhang S,Zhang Y,et al.Molecular cytogenetic analysis of four?Larix?species by bicolor fluorescence in situ hybridization and DAPI banding[J].International Journal of Plant Sciences,2006,167(2):367-372. [11]Kim J,Childs K L,Islam-Faridi M N,et al.Integrated karyotyping of sorghum by in situ hybridization of landed BACs[J].Genome,2002,45:402-412. [12]Dong F,Song J,Naess S K,et al.Development and applications of a set of chromsome-specific cytogenetic DNA markers in patato[J].Theor Appl Genet,2000,101:1001-1007. [13]Shibata F,Nagaki K,Yokota E,et al.Tobacco karyotyping by accurate centromere identification and novel repetitive DNA localization[J].Chromosome Res,2013,21:375-381. [14]Ried T,Baldini A,Rand T C,?et al.Simultaneous visualization of seven different DNA probes by in stiu?hybidization using combinatorial fluorescence and digital imaging microscopy [J]. Proc Natl Acad Sci USA,1992,89:1388-1392. [15]Nederlof P M,van der Flier S,Vrolijk J,et al.Fluorescence ratio measurements of double-labeled probes for multiple in situ?hybridization by digital imaging microscopy[J] . Cytometry, 1992,13(8):839-845. [16]Levsky J M,Singer R H.Fluorescence in situ hybridization:past,present and future[J].Journal of Cell Science,2003,116:2833-2838. [17]Hasterok R,Langdon T,Taylor S,et al.Combinatorial labeling of DNA probes enables multicolour fluorescence in situ hybridization in plants[J].Folia?Histochemica Et Cytobiologica, 2002,40(3):319-323. [18]董凤平,韩素英,张守功,等.25S rDNA在杨属植物染色体上的定位[J].云南植物研究,2007,29(4):423-428. [19]Lengerova M,Kejnovsky E,Hobza R,et al.Multicolor FISH mapping of the dioecious model plant,Silene latifolia[J].Theor Appl Genet,2004,108:1193-1199. [20]Vischi M,Jurman I,Bianchi G,et al.Karyotype of Norway spruce by multicolor FISH[J].Theor Appl Genet,2003,107:591-597. [21]Schwarzacher T,Leitch A R,Bennett M K,et al.In situ?localization of parental genomes in a wide hybrid[J].Ann Bot,1989,98:315-324. [22]Neelam K,Rawat N,Tiwari V K,et al.Introgression of group 4 and 7 chromosomes of Ae.peregrinain wheat enhances grain iron and zinc density[J].Mol Breeding,2011,28:623-634. [23]Chester M,Gallagher J P,Symonds V V,et al.Extensive chromosomal variation in a recently formed natural allopolyploid species,Tragopogon miscellus (Asteraceae)[J]. PNAS, 2012, 6:1176-1181. [24]Maluszynska J,Hasterok R.Identification of individual chromosomes and parental genomes in Brassica juncea?using GISH and FISH[J].Cytogenetic and Genome Research, 2005, 109: 310-314. [25]Han F,Fedak G,Benabdelmouna A,et al.Characterization of six wheat×Thinopyrum intermedium?derivatives by GISH,RFLP and multicolor GISH[J].Genome,2003,46:490-495. [26]Han F,Liu B,Fedak G,et al.Genomic constitution and variation in five partial amphiploids of wheat-Thinopyrum intermedium?as revealed by GISH,multicolor GISH and seed storage protein analysis[J].Theor Appl Genet,2004,109:1070-1076. [27]Zoller?J F,Yang Y,Reinhold G,et al.Comparative genomic in situ hybridization?(cGISH) analysis on plant chromosomes revealed by labeled Arabidopsis?DNA[J].Chromosome Res,2001(9):357-375. [28]Pinkel D,Langegent J,Collins C,et al.Fluorescence in situ?hybfidization with human chromosome-specific libraries:Detection of trisomy 21 and translocations of chromosome 4[J].Proc Natl Acad Sci USA,1988,85:9138-9142. [29]Houben A,Field B L,Saunders V A.Microdissection and chromosome painting of plant B chromosomes[J].Methods in Cell Science,2001,23:115-124. [30]Yu F,Lei Y T,Li Y,et al.Cloning and characterization of chromosomal markers in alfalfa( Medicago sativa L.)[J].Theor Appl Genet,2013,126:1885-1896. [31]Lysak M A,Pecinka A,Schubert I.Recent progress in chromosome painting of Arabidopsis?and related species[J].Chromosome Res,2003(11):195-204. [32]Almeida?C,Pedrosa-Harand A.High macro-collinearity between?lima bean (Phaseolus lunatus?L.) and the common bean (P.vulgaris?L.) as revealed by comparative cytogenetic mapping[J].Theor Appl Genet,2013,126:1909-1916. [33]Budiman M A,Chang S,Lee S,et al.?Localization of jointless-2?gene in the centromeric region of tamato chromosome 12 based on high resolution genetic?and physical mapping[] . Theor Appl Genet,2004,108:190-196. [34]Islam-Faridi M N,Childs K L,Klein P E,et al.A molecular cytogenetic map of sorghum chromosome 1:fluorescence in situ?hybridization analysis with mapped bacterial artificial chromosomes[J].Genetics,2002,161:345-353. [35]Dong F,Song J,Naess S K,et al.Development and applications of a set of chromsome-specific cytogenetic DNA markers in patato[J].Theor Appl Genet,2000,101:1001-1007. [36]Zhang P,Li W,Friebe B,et al.Simultaneous painting of three genomes in hexaploid wheat by BAC-FISH[J].Genome,2004,47:979-987. [37]Nakamura R,Kitamura S,Inoue M,et al.Karyotype analysis of Nicotiana kawakamii?Y.Ohashi using DAPI banding and rDNA FISH[J].Theor Appl Genet,2001,102:810-814. [38]LiuJ Y,She C W,Hu Z L,et al.A new chromosome fluorescence bandingtechnique combining DAPI staining with image analysis in plants[J].Chromosoma,2004,113:16-21. [39]Yurkevich O Y,Naumenko-Svetlova A A,Bolsheva N L,〖JP3〗et al. Investigation of genome polymorphism and seed coat anatomy of species of section Adenolinum from the genus Linum[J].Genet Resour Crop Evol,2013,60:661-676. [40]Urdampilleta J D,Coulleri J P,Ferrucci M S,et al.Karyotype evolutio n and phylog enetic analyses in the genus Cardiospermum L.(Paullinieae,Sapindaceae)[J].Plant Biology, ?2013(15):868-881. [41]Karlov G I,Danilova T V,Horlemann C,et al.Molecular cytogenetics in hop (Humulus lupulusL.) and identification of sex chromosomes by DAPI-banding[J].Euphytica,2003,132:185-190. [42]LiuJ Y,She C W,Hu Z L,et al.A?new chromosome fluorescence banding?technique combining DAPI staining with image analysis in plants[J].Chromosoma,2004,113:16-21.
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备注/Memo
第一作者简介:张力鹏(1989-),男,硕士研究生,研究方向为分子细胞遗传学。E-mail:lipengzhang@mail.nankai.edu.cn.