|Table of Contents|

Research Progresses of Regulating Plant Growth and Development by MiRNAs(PDF)

《北方园艺》[ISSN:1001-0009/CN:23-1247/S]

Issue:
2016年05
Page:
200-206
Research Field:
Publishing date:

Info

Title:
Research Progresses of Regulating Plant Growth and Development by MiRNAs
Author(s):
CHEN Si1CHEN Wei1PANG Jiliang12
(1.School of Life and Environmental Sciences,Hangzhou Normal University,Hangzhou,Zhejiang 310036;2.Zhejiang Province Key Laboratory of Medicinal Plant Germplasm Improvement and Quality Control Technology,Hangzhou,Zhejiang 310036)
Keywords:
plant miRNAsplant organ developmentgene expression regulation
PACS:
-
DOI:
10.11937/bfyy.201605052
Abstract:
Plant miRNAs are small non-coding RNAs which widely exist in plant genomes,and mainly regulate gene expression in the post-transcriptional level by guiding the cleavages or attenuating the translation of target gene,and thus affect plant organ and development.This review provided a summary of the biogenesis and action mechanism of plant miRNAs,and discussed the role of miRNAs families that had been involved in the control of plant organ development,and provided theoretical basis for revealing the regulatory mechanism of plant organ development comprehensively as soon as possible.

References:

 

[1] BARTEL D P.MicroRNAs:genomics,biogenesis,mechanism,and function[J].Cell,2004,116(2):281-297.

[2]ZHANG B,WANG Q,PAN X.MicroRNAs and their regulatory roles in animals and plants[J].Journal of Cellular Physiology,2007,210(2):279-289.

[3]LEE R C,FEINBAUM R L,AMBROS V.The C.elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14[J].Cell,1993,75(5):843-854.

[4]REINHART B J,SLACK F J,BASSON M,et al.The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans[J].Nature,2000,403(6772):901-906.

[5]PARK W,LI J,SONG R,et al.CARPEL FACTORY,a Dicer homolog,and HEN1,a novel protein,act in microRNA metabolism in Arabidopsis thaliana[J].Current Biology:CB,2002,12(17):1484-1495.

[6]LLAVE C,KASSCHAU K D,RECTOR M A,et al.Endogenous and silencing-associated small RNAs in plants[J].The Plant Cell,2002,14(7):1605-1619.

[7]METTE M F,van de WINDEN J,MATZKE M,et al.Short RNAs can identify new candidate transposable element families in Arabidopsis[J].Plant Physiology,2002,130(1):6-9.

[8]REINHART B J,WEINSTEIN E G,RHOADES M W,et al.MicroRNAs in plants[J].Genes and Development,2002,16(13):1616-1626.

[9]HE S,YANG Z,SKOGERBO G,et al.The properties and functions of virus encoded microRNA,siRNA,and other small noncoding RNAs[J].Critical Reviews in Microbiology,2008,34(3-4):175-188.

[10] PFEFFER S,ZAVOLAN M,GRSSER F A,et al.Identification of virus-encoded microRNAs[J].Science (New York,N Y),2004,304(5671):734-736.

[11]SIOMI H,SIOMI M C.Posttranscriptional regulation of microRNA biogenesis in animals[J].Molecular Cell,2010,38(3):323-332.

[12]ZHANG Z,YU J,LI D,et al.PMRD:plant microRNA database[J].Nucleic Acids Research,2010,38(Database issue):806-813.

[13]PAREEK M,YOGINDRAN S,MUKHERJEE S K,et al.Plant MicroRNAs:Biogenesis,Functions,and Applications[G].Plant Biology and Biotechnology.India:Springer2015:639-661.

[14]CHEN X.MicroRNA biogenesis and function in plants[J].FEBS Letters,2005,579(26):5923-5931.

[15]NAQVI A R,SARWAT M,HASAN S,et al.Biogenesis,functions and fate of plant microRNAs[J].Journal of Cellular Physiology,2012,227(9):3163-3168.

[16]LEE Y,JEON K,LEE J T,et al.MicroRNA maturation:stepwise processing and subcellular localization[J].The EMBO Journal,2002,21(17):4663-4670.

[17]LEE Y,AHN C,HAN J,et al.The nuclear RNase III Drosha initiates microRNA processing[J].Nature,2003,425(6956):415-419.

[18]LEE Y,KIM M,HAN J,et al.MicroRNA genes are transcribed by RNA polymerase II[J].The EMBO Journal,2004,23(20):4051-4060.

[19]VOINNET O.Origin,biogenesis,and activity of plant microRNAs[J].Cell,2009,136(4):669-687.

[20]ZENG Y,Wagner E J,Cullen B R.Both natural and designed micro RNAs can inhibit the expression of cognate mRNAs when expressed in human cells[J].Molecular Cell,2002,9(6):1327-1333.

[21]KIDNER C A,MARTIENSSEN R A.The developmental role of microRNA in plants[J].Current Opinion in Plant Biology,2005,8(1):38-44.

[22]YANG G,YANG L,ZHAO Z,et al.Signature miRNAs involved in the innate immunity of invertebrates[J].PLOS One,2012,7(6):e39015.

[23]TANG G,REINHART B J,BARTEL D P,et al.A biochemical framework for RNA silencing in plants[J].Genes & Development,2003,17(1):49-63.

[24]XIE Z,ALLEN E,FAHLGREN N,et al.Expression of Arabidopsis miRNA genes[J].Plant Physiology,2005,138(4):2145-2154.

[25]LIU Q,SHI L,FANG Y.Dicing bodies[J].Plant Physiology,2012,158(1):61-66.

[26]YANG Z,EBRIGHT Y W,YU B,et al.HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2 OH of the 3 terminal nucleotide[J].Nucleic Acids Research,2006,34(2):667-675.

[27]RAMACHANDRAN V,CHEN X.Degradation of microRNAs by a family of exoribonucleases in Arabidopsis[J].Science (New York,N Y),2008,321(5895):1490-1492.

[28]SHAO C,MA X,XU X,et al.Identification of the highly accumulated microRNA*s in Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa)[J].Gene,2013,515(1):123-127.

[29]CHEN X.A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development[J].Science (New York,N Y),2004,303(5666):2022-2025.

[30]ELBASHIR S M,LENDECKEL W,TUSCHL T.RNA interference is mediated by 21-and 22-nucleotide RNAs[J].Genes & Development,2001,15(2):188-200.

[31]WU L,ZHOU H,ZHANG Q,et al.DNA methylation mediated by a microRNA pathway[J].Molecular Cell,2010,38(3):465-475.

[32]JIN D,WANG Y,ZHAO Y,et al.MicroRNAs and their cross-talks in plant development[J].Journal of Genetics and Genomics,2013,40(4):161-170.

[33]GRIGG S P,CANALES C,HAY A,et al.SERRATE coordinates shoot meristem function and leaf axial patterning in Arabidopsis[J].Nature,2005,437(7061):1022-1026.

[34]GRIGG S P,GALINHA C,KORNET N,et al.Repression of apical homeobox genes is required for embryonic root development in Arabidopsis[J].Current BiologyCB,2009,19(17):1485-1490.

[35]KHAN G A,DECLERCK M,SORIN C,et al.MicroRNAs as regulators of root development and architecture[J].Plant Molecular Biology,2011,77(1-2):47-58.

[36]WANG J W,WANG L J,MAO Y B,et al.Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis[J].The Plant Cell,2005,17(8):2204-2216.

[37]MALLORY A C,BARTEL D P,BARTEL B.MicroRNA-directed regulation of Arabidopsis auxin response factor17 is essential for proper development and modulates expression of early auxin response genes[J].The Plant Cell,2005,17(5):1360-1375.

[38]CARLSBECKER A,LEE J Y,ROBERTS C J,et al.Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate[J].Nature,2010,465(7296):316-321.

[39]BOUALEM A,LAPORTE P,JOVANOVIC M,et al.MicroRNA166 controls root and nodule development in Medicago truncatula[J].The Plant Journalfor Cell and Molecular Biology,2008,54(5):876-887.

[40]GUO H S,XIE Q,FEI J F,et al.MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development[J].The Plant Cell,2005,17(5):1376-1386.

[41]GLEESON M,CONSTANTIN M,BERNARD J C,et al.MicroRNAs as regulators of adventitious root development[J].Journal of Plant Biochemistry and Biotechnology,2014,23(4):339-347.

[42]MENG Y,HUANG F,SHI Q,et al.Genome-wide survey of rice microRNAs and microRNA-target pairs in the root of a novel auxin-resistant mutant[J].Planta,2009,230(5):883-898.

[43]COMBIER J P,FRUGIER F,DE BILLY F,et al.MtHAP2-1 is a key transcriptional regulator of symbiotic nodule development regulated by microRNA169 in Medicago truncatula[J].Genes & Development,2006,20(22):3084-3088.

[44]LI H,DENG Y,WU T,et al.Misexpression of miR482,miR1512,and miR1515 increases soybean nodulation[J].Plant Physiology,2010,153(4):1759-1770.

[45]ZHU H,HU F,WANG R,et al.Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development[J].Cell,2011,145(2):242-256.

[46]WANG L,MAI Y X,ZHANG Y C,et al.MicroRNA171c-targeted SCL6-II,SCL6-III,and SCL6-IV genes regulate shoot branching in Arabidopsis[J].Molecular Plant,2010,3(5):794-806.

[47]SCHWARZ S,GRANDE A V,BUJDOSO N,et al.The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis[J].Plant Molecular Biology,2008,67(1-2):183-195.

[48]VEIT B.Hormone mediated regulation of the shoot apical meristem[J].Plant Molecular Biology,2009,69(4):397-408.

[49]LIU P P,MONTGOMERY T A,FAHLGREN N,et al.Repression of auxin response factor10 by microRNA160 is critical for seed germination and post-germination stages[J].The Plant Journalfor Cell and Molecular Biology,2007,52(1):133-146.

[50]孙宇哲,查玉龙,翁晓燕,.小分子RNA在植物叶发育中的调控作用[J].中国生物化学与分子生物学报,2012,288:700-705.

[51]LAUFS P,PEAUCELLE A,MORIN H,et al.MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems[J].Development (Cambridge,England),2004,131(17):4311-4322.

[52]刘宁.被子植物叶的发育和调控机制[J].生物学通报,2008,433:2-5.

[53]ZHONG R,YE Z H.Amphivasal vascular bundle 1,a gain-of-function mutation of the IFL1/REV gene,is associated with alterations in the polarity of leaves,stems and carpels[J].Plant & Cell Physiology,2004,45(4):369-385.

[54]JUAREZ M T,TWIGG R W,TIMMERMANS M C.Specification of adaxial cell fate during maize leaf development[J].Development (Cambridge,England),2004,131(18):4533-4544.

[55]WANG L,GU X,XU D,et al.miR396-targeted AtGRF transcription factors are required for coordination of cell division and differentiation during leaf development in Arabidopsis[J].Journal of Experimental Botany,2011,62(2):761-773.

[56]DEBERNARDI J M,RODRIGUEZ R E,MECCHIA M A,et al.Functional specialization of the plant miR396 regulatory network through distinct microRNA-target interactions[J].PLOS Genetics,2012,8(1):e1002419.

[57]PALATNIK J F,ALLEN E,WU X,et al.Control of leaf morphogenesis by microRNAs[J].Nature,2003,425(6955):257-263.

[58]ALLEN R S,LI J,STAHLE M I,et al.Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family[J].Proceedings of the National Academy of Sciences2007,104(41):16371-16376.

[59]CHEN Z H,BAO M L,SUN Y Z,et al.Regulation of auxin response by miR393-targeted transport inhibitor response protein 1 is involved in normal development in Arabidopsis[J].Plant Molecular Biology,2011,77(6):619-629.

[60]KUTTER C,SCHB H,STADLER M,et al.MicroRNA-mediated regulation of stomatal development in Arabidopsis[J].The Plant Cell,2007,19(8):2417-2429.

[61]SPANUDAKIS E,JACKSON S.The role of microRNAs in the control of flowering time[J].Journal of Experimental Botany,2014,65(2):365-380.

[62]WU G,POETHIG R S.Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3[J].Development (Cambridge,England),2006,133(18):3539-3547.

[63]AUKERMAN M J,SAKAI H.Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes[J].The Plant Cell,2003,15(11):2730-2741.

[64] 黄赫,徐启江.MicroRNA调控被子植物花发育的研究进展[J].植物生理学报,2012,4810:929-940.

[65]WU G,PARK M Y,CONWAY S R,et al.The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis[J].Cell,2009,138(4):750-759.

[66]SCHMID M,UHLENHAUT N H,GODARD F,et al.Dissection of floral induction pathways using global expression analysis[J].Development (Cambridge,England),2003,130(24):6001-6012.

[67]ACHARD P,HERR A,BAULCOMBE D C,et al.Modulation of floral development by a gibberellin-regulated microRNA[J].Development (Cambridge,England),2004,131(14):3357-3365.

[68]SARVEPALLI K,NATH U.Hyper-activation of the TCP4 transcription factor in Arabidopsis thaliana accelerates multiple aspects of plant maturation[J].The Plant Journalfor Cell and Molecular Biology,2011,67(4):595-607.

[69] FAHLGREN N,MONTGOMERY T A,HOWELL M D,et al.Regulation of auxin response factor3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis[J].Current BiologyCB,2006,16(9):939-944.

[70]KIM W,AHN H J,CHIOU T J,et al.The role of the miR399-PHO2 module in the regulation of flowering time in response to different ambient temperatures in Arabidopsis thaliana[J].Molecules and Cells,2011,32(1):83-88.

[71] MALLORY A C,DUGAS D V,BARTEL D P,et al.MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic,vegetative,and floral organs[J].Current BiologyCB,2004,14(12):1035-1046.

[72]JUNG J H,PARK C M.MIR166/165 genes exhibit dynamic expression patterns in regulating shoot apical meristem and floral development in Arabidopsis[J].Planta,2007,225(6):1327-1338.

[73]NAG A,KING S,JACK T.MiR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis[J].Proceedings of the National Academy of Sciences,2009,106(52):22534-22539.

[74]MOXON S,JING R,SZITTYA G,et al.Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening[J].Genome Research,2008,18(10):1602-1609.

[75]ROSAS-CRDENAS F D,CABALLERO-PREZ J,GUTIRREZ- RAMOS X,et al.MiRNA expression during prickly pear cactus fruit development[J].Planta,2015,241(2):435-448.

[76]ZHANG X,ZOU Z,ZHANG J,et al.Over-expression of sly-miR156a in tomato results in multiple vegetative and reproductive trait alterations and partial phenocopy of the sft mutant[J].FEBS Letters,2011,585(2):435-439.

[77]HU G,FAN J,XIAN Z,et al.Overexpression of SlREV alters the development of the flower pedicel abscission zone and fruit formation in tomato[J].Plant Sciencean International Journal of Experi,2014,22986-95.

[78]高超.番茄果实成熟相关转录因子RIN功能及其对MicroRNA表达调控研究[D].北京:中国农业大学,2014.

[79] ZHANG L,HOU D,CHEN X,et al.Exogenous plant MIR168a specifically targets mammalian LDLRAP1:evidence of cross-kingdom regulation by microRNA[J].Cell Research,2012,22(1):107-126.

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Last Update: 2016-04-27