|Table of Contents|

GenomEwide Identification and Bioinformatics Analysis of the YABBY Gene Family in Watermelon

《北方园艺》[ISSN:1001-0009/CN:23-1247/S]

Issue:
2023年14
Page:
22-29
Research Field:
Publishing date:

Info

Title:
GenomEwide Identification and Bioinformatics Analysis of the YABBY Gene Family in Watermelon
Author(s):
YU Yuhong1; ZHAO Zhan2
(1.Kaifeng Institute of Vegetable Science，Kaifeng，Henan 450004;2.College of Information Engineering，Kaifeng University/Research Center of Highstandard Farmland Intelligent Irrigation Project in Henan/Kaifeng Agricultural Internet of Tings Engineering Technology Center，Kaifeng，Henan 450004)
Keywords:
watermelon; YABBY gene family; genomEwide identification; bioinformatics; analysis
PACS:
-
DOI:
10.11937/bfyy.20223785
Abstract:
TBtools，MEGA，ITOL and other software were used，the whole genome of watermelon YABBY gene family was identified and analyzed by bioinformatics.The genomEwide identification，chromosome mapping，gene structure analysis，protein conserved motifs analysis，phylogenetic tree analysis，promoter cisacting element analysis and collinearity analysis of watermelon YABBY gene family were studied,in order to provide reference for functional research and molecular mechanism of watermelon YABBY gene.The results showed that there were 9 members of watermelon YABBY gene family distributed on 7 chromosomes.The amino acid number of the protein encoded by watermelon YABBY gene ranged from 169 aa to 242 aa，the molecular weight of the protein varied from 19.07 kDa to 26.91 kDa，and the theoretical isoelectric point PI of the protein ranged from 7.53 to 9.69.The watermelon YABBY gene family was divided into three groups.The same group had the same exon intron arrangement and similar conserved motifs.The YABBY gene family of watermelon， Arabidopsis thaliana，rice and tomato was divided into five subgroups.Each subgroup had watermelon YABBY gene members respectively.The promoter region of watermelon YABBY gene contained various cisacting elements related to hormone response，light response，stress response and transcription factor binding sites.There were three pairs of watermelon YABBY gene family genes with tandem duplication and fragment duplication.

References:

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Last Update: 2023-08-29