|Table of Contents|

Identification and Analysis of Transcription Factors in Apple Genome(PDF)

《北方园艺》[ISSN:1001-0009/CN:23-1247/S]

Issue:
2018年09
Page:
42-50
Research Field:
Publishing date:

Info

Title:
Identification and Analysis of Transcription Factors in Apple Genome
Author(s):
XU Ruirui; GAO Minggang; LIU Chunxiang
(College of Biological and Agricultural Engineering，Weifang University/Key Laboratory of Biochemistry and Molecular Biology in Universities of Shandong，Weifang，Shandong 261061)
Keywords:
apple; genome; transcription factor; identification and analysis; drought
PACS:
-
DOI:
10.11937/bfyy.20173398
Abstract:
Transcription factors (TFs) are essential regulators of gene expression.To better understand TFs encoding genes in Rosaceae，especially in apple，a silico genomic analysis of TFs prediction was performed using apple genomes，as well as compared with peach and strawberry.The results showed that a total of 3 039，1 527 and 1 506 TFs genes were identified in apple，peach and strawberry，respectively，which could be classified into 58 families.The genomic location showed that the predicted TFs were distributed across all chromosomes with different densities.Meanwhile，all the TFs had the similar GO terms and subcellular localization information.Then，the drought-related transcription factors in apple homologous with AtMYBs were predicted and detected in Arabidopsis.Encouragingly，six of the selected genes were found to respond to PEG treatments in M.hupehensis and T337 with the similar trends.To the best of our knowledge，this was the first report of a genome-wide analysis of the TFs gene family in three rosaceous plants.This study provided valuable information for understanding the classification and putative functions of the TFs in rosaceous plant.

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Last Update: 2018-05-23