|Table of Contents|

Identification and Bioinformatics Analysis of Thaumatin-like Protein Family in Vigna radiata(PDF)

《北方园艺》[ISSN:1001-0009/CN:23-1247/S]

Issue:
2017年20
Page:
31-39
Research Field:
Publishing date:

Info

Title:
Identification and Bioinformatics Analysis of Thaumatin-like Protein Family in Vigna radiata
Author(s):
LIU Chao; HAN Lihong; WANG Haibo; SONG Peibing; TANG Lizhou
Center for Yunnan Plateau Biological Resources Protection and Utilization,Qujing Normal University/College of Biological Resource and Food Engineering/Key Laboratory of Yunnan Province Universities of the Diversity and Ecological Adaptive Evolution for Animals and Plants on YunGui Plateau,Qujing,Yunnan 655011
Keywords:
Vigna radiata; thaumatin-like protein; codon usage bias; bioinformatics
PACS:
-
DOI:
10.11937/bfyy.20172195
Abstract:
In order to understand the basic biological characteristics of mungbean thaumatin-like protein (TLP) family on the genomic level,this study analyzed and identified gene structure and phylogenesis of 34 mungbean TLP family members through genome database and bioinformatics method.The results showed that the TLP gene structure classified into four types,TLP genes distributed on nine of eleven chromosomes,phylogenesis analysis showed that mungbean TLP family proteins classified into ten evolutionary groups.Most members of group sixth and seventh mainly derived from chromosome eleven.Analysis revealed mungbean TLP family genes preference A or T as the third codon,but generally codon usage bias was not strong.Most of genes belonged to the low expression genes,and affected by mutation and positive selection pressure.This study laid a foundation for cloning of TLP genes and further functional dissection in antifungal activity.

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Last Update: 2017-10-31