[1]VELCULESCU V E,ZHANG L,ZHOU W,et al.Characterization of the yeast transcriptome[J].Cell,1997,88(2):243-251. [2]周华，张新，刘腾云，等.高通量转录组测序的数据分析与基因发掘[J].江西科学，2012,30(5):607-611. [3]吴琼，孙超，陈士林，等.转录组学在药用植物研究中的应用[J].世界科学技术(中医药现代化)，2010,12(3):457-461. [4]薛建江，邱景富.病原菌感染宿主的转录组学研究进展[J].河北北方学院学报(医学版),2007,24(5):63-66. [5]COSTA V，ANGELINI C，de FEIS I，et al.Uncovering the complexity of transcriptomes with RNA-Seq[J].J Biomed Biotechnol，2010，6（27）：853-916. [6]RUAN Y，LE BER P，NG H H,et al.Interrogating the transcriptome[J].Trends Biotechnol,2004（22）:23-30. [7]WANG Z,GERSTEIN M,SNYDER M.RNA-Seq：A revolutionary tool for transcriptomics[J].Nat Rev Genet,2009（10）:57-63. [8]VELCULESCU V E，ZHANG L，VOGELSTEIN B，et al.Serial analysis of gene expression[J].Science，1995，270(5235):484-487. [9]岳桂东，高强，罗龙海，等.高通量测序技术在动植物研究领域中的应用[J].中国科学:生命科学,2012,42(2):107-124. [10]刘思言，沈铖武，王丕武.基因芯片技术在植物中的应用研究进展[J].广东农业科学,2013(8):136-138. [11]RAMSAY G.DNA chips:State of the art[J].Nature Biotechnology,1998，16(1):40-44. [12]张骞，盛军.基因芯片技术的发展和应用[J].中国医学科学学报,2008,30(3):344-347. [13]姜庆利.检测柯萨奇病毒、副流感病毒基因芯片的建立[D].长春:吉林大学,2013. [14]MARK D.Serial analysis of gene expression:ESTs get smaller[J].Bioessays,1996，18(4):261-262. [15]NIELSEN K L,HGH A L,EMMERSEN J.Deep SAGE-digital transcriptomics with high sensitivity，simple experimental protocol and multiplexing of samples[J].Nucleic Acids Res,2006,34:133. [16]MOLINA C，ZAMAN-ALLAH M，KHAN F.The salt-responsive transcriptome of chickpea roots and nodules via deep Super SAGE[J].BMC Plant Biol,2011(11):31. [17]CHUM W W，KWAN H S，AU C H,et al.Cataloging and profiling genes expressed in Lentinula edodes fruiting body by massive cDNA pyrosequencing and Long SAGE[J].Fungal Genet Biol,2011,48:359-369. [18]王大力，黄大鹏.基因表达系列分析技术研究进展[J].动物医学进展，2009，30(4):69-72. [19]鲍忠赞，张彩霞，徐世清，等.应用基因表达系列分析 (SAGE) 技术研究高温处理前后家蚕的基因表达差异[J].蚕业科学，2012,38(3):456-467. [20]邓永键，郝飞.基因表达系列分析及其应用前景[J].免疫学杂志，2003,19(4)：315-321. [21]刘红亮，郑丽明，刘青青，等.非模式生物转录组研究[J].遗传，2013,35(8)：955-970. [22]井赵斌，魏琳，俞靓，等.转录组测序及其在牧草基因资源发掘中的应用前景[J].草业科学，2011,28（7):1364-1369. [23]祁云霞，刘永斌，荣威恒.转录组研究新技术:RNA-Seq 及其应用[J].遗传，2011,33(11):1191-1202. [24]张春兰，秦孜娟,王桂芝,等.转录组与RNA-Seq技术[J].生物技术通报,2012(12):51-56. [25]WALL P K，LEEBENS-MACK J，CHANDERBALI A S，et al.Comparison of next generation sequencing technologies for transcriptome characterization[J].BMC Genomics，2009(10):347. [26]ADAMS M D，KELLEY J M，GOCAYNE J D，et al.Complementary DNA sequencing：expressed sequence tags and human genome project[J].Science,1991,252(5013):1651-1656. [27]BOUCK A，VISION T.The molecular ecologist′s guide to expressed sequence tags[J].Mol Ecol,2007，16(5)：907-924. [28]MARGULIES M，EGHOLM M，ALTMAN W E，et al.Genome sequencing in microfabricated high-density picolitre reactors[J].Nature,2005，437(7057):376-380. [29]PORRECA G J，ZHANG K，LI J B，et al.Multiplex amplification of large sets of human exons[J].Nat Methods，2007，4(11):931-936. [30]张全芳，李军，范仲学，等.高通量测序技术在农业研究中的应用[J].山东农业科学，2013，45(1)：137-140. [31]WANG Z W,JIANG C,WEN Q，et al.Deep sequencing of the Camellia chekiangoleosa transcriptome revealed candidate genes for anthocyan in biosynthesis[J].Gene，2014，538(1):1-7. [32]李滢，孙超，罗红梅，等.基于高通量测序454 GS FLX 的丹参转录组学研究[J].药学学报，2010，45(4)：524-529. [33]ALAGNA F，AGOSTINO N D，TORCHIA L，et al.Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development[J].BMC Genomics,2009(10):399. [34]HE L,XU X,LI Y，et al.Transcriptome analysis of buds and leaves using 454 pyrosequencing to discover genes associated with the biosynthesis of active ingredients in Lonicera japonica Thunb.[J].PLoS One，2013，8(4):e62922. [35]BHATTACHARYYA D,SINHA R,HAZRA S，et al.De novo transcriptome analysis using 454 pyrosequencing of the Himalayan Mayapple,Podophyllum hexandrum[J].BMC Genomics,2013(14):748. [36]DUARTE J,RIVIERE N,BARANGER A，et al.Transcriptome sequencing for high throughput SNP development and genetic mapping in pea[J].BMC Genomics，2014，15(1):126. [37]WANG XL,LI Y,LIAO L，et al.Isolation and characterization of microsatellite markers for Axonopus compressus(Sw.) Beauv.(Poaceae) using 454 sequencing technology[J].Genet Mol Res,2015,14(2):4696-4702. [38]WANG F,CHEN H,LI X，et al.Mining and identification of polyunsaturated fatty acid synthesis genes active during camelina seed development using 454 pyrosequencing[J].BMC Plant Biol,2015(15):147. [39]ZHU G,YANG F,SHI S，et al.Transcriptome characterization of cymbidium sinense ‘Dharma’ using 454 pyrosequencing and its application in the identification of genes associated with leaf color variation[J].PLoS One,2015，10(6):e0128592. [40]MOELLER S,WHRMANN T,HUETTEL B，et al.Development of 18 polymorphic microsatellite markers for Vinca minor (Apocynaceae) via 454 pyrosequencing[J].Appl Plant Sci,2015，3(5):1500015. [41]陈新.榛子花芽转录组文库的Solexa测序及冷调节基因的表达谱分析[D].北京:中国林业科学研究院,2011. [42]XU Q,ZHANG Y,CHEN Y，et al.Identification and differential expression of microRNAs in ovaries of laying and broody geese (Anser cygnoides) by Solexa sequencing[J].PLoS One,2014，9(2):e87920. [43]MI X,WEI Z,ZHOU Z，et al.dentification and profiling of sex-biased microRNAs from sea urchin Strongylocentrotus nudus gonad by Solexadeep sequencing[J].Comp Biochem Physiol Part D Genomics Proteomics,2014，10C:1-8. [44]XIAO J,ZHONG H,ZHOU Y，et al.Identification and characterization of microRNAs in ovary and testis of Nile tilapia (Oreochromis niloticus) by using solexa sequencing technology[J].PLoS One,2014，9(1):e86821. [45]ZHOU Y,CHEN L,FAN X，et al.De novo assembly of auricularia polytricha transcriptome using illumina sequencing for gene discovery and ssr marker identification[J].PLoS One,2014，9(3):e91740. [46]WU Q,XU L,GUO J，et al.Transcriptome profile analysis of sugarcane responses to Sporisorium scitaminea infection using Solexa sequencing technology[J].Biomed Res Int，2013:298920. [47]ZHAO Z，WU G，WANG J，et al.Next-generation sequencing-based transcriptome analysis of Helicoverpa armigera larvae immune-primed with Photorhabdus luminescens TT01[J].PLoS One，2013，8(11):e80146. [48]YI S，GAO Z X，ZHAO H，et al.Identification and characterization of microRNAs involved in growth of blunt snout bream (Megalobrama amblycephala) by Solexa sequencing[J].BMC Genomics，2013(14):754. [49]KANG K，ZHONG J，JIANG L，et al.Identification of microRNA-Like RNAs in the filamentous fungus Trichoderma reesei by Solexa sequencing[J].PLoS One,2013，8(10):e76288. [50]WANG F，LI H，ZHANG Y，et al.MicroRNA expression analysis of rosette and folding leaves in Chinese cabbage using high-throughput Solexasequencing[J].Gene，2013，32(2):222-229. [51]PAN Y Z，WU S G，DAI H C，et al.Solexa sequencing of microRNAs on chromium metabolism in broiler chicks[J].Nutrigenet Nutrigenomics，2013，6(3):137-153. [52]YUAN C，WANG X，GENG R，et al.Discovery of cashmere goat (Capra hircus) microRNAs in skin and hair follicles by Solexa sequencing[J].BMC Genomics，2013(14):511. [53]张绍鹏，金健，胡炳雄，等.珍稀药用植物珠子参的转录组测序及分析[J].中国中药杂志，2015,40(1)：2084-2089. [54]RAVEENDAR S,NA Y W,LEE J R，et al.The complete chloroplast genome of Capsicum annuum var.glabriusculum using illumina sequencing[J].Molecules,2015,20(7):13080-13088. [55]MITRA S，FRSTER-FROMME K，DAMMS-MACHADO A，et al.Analysis of the intestinal microbiota using SOLiD 16S rRNA gene sequencing and SOLiD shotgun sequencing[J].BMC Genomics，2013，5:S16. [56]李小白，向林，罗洁，等.转录组测序(RNA-seq)策略及其数据在分子标记开发上的应用[J].中国细胞生物学学报，2013,35(5):720-726. [57]WANG L，LI P，BRUTNELL T P.Exploring plant transcriptomes using ultra high-throughput sequencing[J].Brief Funct Genomics，2010,9(2):118-128. [58]YAN H，ZHANG H，CHEN M，et al.Transcriptome and gene expression analysis during flower blooming in Rosa chinensis ‘Pallida’[J].Gene，2013,540(1):96-103. [59]GIORDANO A，COGAN NO，KAUR S，et al.Gene discovery and molecular marker development，based on high-throughput transcript sequencing of paspalum dilatatum poir[J].PLoS One,2014，9(2):e85050. [60]CHE R，SUN Y，WANG R，et al.Transcriptomic analysis of endangered chinese salamander：identification of immune，sex and reproduction-related genes and genetic markers[J].PLoS One,2014,9(1)：e87940. [61]NG D W，SHI X，NAH G，et al.High-throughput RNA-seq for allelic or locus-specific expression analysis in Arabidopsis-related species，hybrids，and allotetraploids[J].Methods Mol Biol,2014,1112:33-48. [62]LIU R，DONG Y，FAN G，et al.Discovery of genes related to witches broom disease in Paulownia tomentosa×Paulownia fortunei by a de novo assembled transcriptome[J].PLoS One,2013,8(11):e80238. [63]HSU J C，CHIEN T Y，HU C C，et al.Discovery of genes related to insecticide resistance in Bactrocera dorsalis by functional genomic analysis of a de novo assembled transcriptome[J].PLoS One,2012,7(8):e40950. [64]KAYA H B，CETIN O，KAYA H，et al.SNP discovery by illumina-based transcriptome sequencing of the olive and the genetic characterization of Turkish olive genotypes revealed by AFLP，SSR and SNP markers[J].PLoS One,2013,8(9):e73674. [65]ZOU D，CHEN X，ZOU D.Sequencing，de novo assembly，annotation and SSR and SNP detection of sabaigrass (Eulaliopsis binata)transcriptome[J].Genomics，2013，102(1):57-62. [66]NICOLA M，PISANI C，BOUCHET J P，et al.Discovery of a large set of SNP and SSR genetic markers by high-throughput sequencing of pepper (Capsicum annuum)[J].Net Mol Res，2012，11(3):2295-2300. [67]WEI L，LI S，LIU S，et al.Transcriptome analysis of Houttuynia cordata Thunb.by Illumina paired-end RNA sequencing and SSR marker discovery[J].PLoS One，2014，9(1):e84105. [68]LIU Z，CHEN T，MA L，et al.Global transcriptome sequencing using the illumina platform and the development of EST-SSR markers in autotetraploid alfalfa[J].PLoS One,2013,8(12):e83549. [69]李满堂,张仕林,邓鹏,等.洋葱转录组 SSR 信息分析及其多态性研究，园艺学报,2015,42(6):1103-1111. [70]WANG Y，PAN Y，LIU Z，et al.De novo transcriptome sequencing of radish (Raphanus sativus L.) and analysis of major genes involved in glucosinolate metabolism[J].BMC Genomics,2013,14:836. [71]LI E，WANG S，LI C，et al.Transcriptome sequencing revealed the genes and pathways involved in salinity stress of Chinese mitten crab，Eriocheir sinensis[J].Physiol Genomics,2014,46(5):177-190. [72]刘英华，陈瑛.高通量测序技术的最新研究进展[J].中国妇幼保健,2013,28(13):1990-1992.