|Table of Contents|

Genome-wide Identification and Bioinformatics Analysis of ARF Gene Family in Brassica oleracea(PDF)

《北方园艺》[ISSN:1001-0009/CN:23-1247/S]

Issue:
2017年19
Page:
16-24
Research Field:
Publishing date:

Info

Title:
Genome-wide Identification and Bioinformatics Analysis of ARF Gene Family in Brassica oleracea
Author(s):
WEI Congcong1; JIANG Ding2; WU Genkun2; CHEN Changming2
1.Yellow River Conservancy Technical Institute,Kaifeng,Henan 475000;2.Horticulture College,South China Agriculture University,Guangzhou,Guangdong 510642
Keywords:
Brassica oleracea; auxin response factor; bioinformatics
PACS:
-
DOI:
10.11937/bfyy.20170746
Abstract:
Auxin response factor (ARF) gene family is the specific transcription factor in plant,and plays an important role in regulation of plant organ development.Based on the published genomic database of Brassica oleracea,29 ARF genes were identified by bioinformatics,named BoARFs.Their genetic structure,chromosome distribution,conservative domain structure of protein,phylogenetic tree and expression pattern of reference were analyzed for the further research of Brassica oleracea ARF gene family function to provide the reference basis.The results showed that the gene structure of BoARF family was relatively complex and contained 2-14 exons.Expect the BoARF29,all other genes were located in different chromosomes.All BoARF proteins had conserved B3 domain and Auxin_resp domain,while only 21 BoARF proteins contained 1 or 2 AUX/IAA domains.Transcriptome data analysis showed that ARF gene had different tissue expression patterns,and some genes showed tissue specificity.

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Last Update: 2017-10-11