|Table of Contents|

Optimization of an ISSR-PCR Reaction System of Chinese Cabbage by Orthogonal Design(PDF)

《北方园艺》[ISSN:1001-0009/CN:23-1247/S]

Issue:
2012年05期
Page:
127-129
Research Field:
Publishing date:

Info

Title:
Optimization of an ISSR-PCR Reaction System of Chinese Cabbage by Orthogonal Design
Author(s):
WU Chun-yanGAO YiSONG Ting-yuZHANG Xiao-mingHAN Yu-zhu
College of Horticulture,Jilin Agricultural University,Changchun,Jilin 130118
Keywords:
Chinese cabbageISSRorthogonal designPCR reaction system
PACS:
S 634.103.6
DOI:
-
Abstract:
Chinese cabbage genomic DNA,extracted from its fresh young leaves by DNA extraction kit was applied to optimize ISSR-PCR amplification system based on orthogonal design.Five factors were considered such as dNTP,Mg2+,Taq- DNA polymerase,primer and template DNA at four levels.A suitable ISSR-PCR reaction system was established.The results showed that 25 μL reaction system containing 1.5 mmol/L Mg2+,200 μmol/L dNTP,0.5 U Taq-DNA polymerase,0.7 μmol/L primer and 30 ng DNA template.The number of cycles was also investigated.Three different cycle numbers of were used to test the optimized reaction system.The results indicated that the appropriate cycle numbers of the optimized reaction was 30.

References:

[1]柯桂兰.中国大白菜育种学[M].北京:中国农业出版社,2009.
[2]朴钟云,吴迪,王淼,等.大白菜抗根肿病近等基因系的分子标记辅助选育[J].园艺学报,2010,37(8):1264-1272. [3]袁鹤,张成合,刘海河,等.大白菜雄性核不育基因的染色体定位及 AFLP 分子标记筛选[J].中国农业科学,2009,42(6):2061-2067.
[4]沈向群,杨文骏.大白菜核基因显性雄性不育性育性恢复基因的RAPD 标记[J].园艺学报,2004,31(6):731.
[5]Zietkiewicz E,Rafalski A,Labuda D.Genome fingerprinting by simple sequence repeat(SSR)-anchored polymerase chain reaction amplification [J].Genomics,1994,20:176-183.
[6]Blair M W,Mccouch S R,Panaud O.Inter-simple sequence repeat(ISSR) amplification for analysis of microsatellite motif frequency and fingerpriting in rice(Oryza sativa L.)[J].Theoretical and Applied Genetics,1999,98:780-792.
[7]苏小俊,徐海,陈龙正,等.丝瓜种质资源亲缘关系的ISSR分析[J].南京农业大学学报,2010,33(3):42-46.
[8]Joshi S P,Aggarwal R K,Ranjekar P K,et al.Genetic diversity and phylogenetic rela-tionship as revealed by inter simple sequence repeat(ISSR)polymorphism in the genus Oryza [J].Theoretical and Applied Genetics,2000,100:1311-1320.
[9]Kojima T,Nagaoka T,Noda K,et al.Genetic linkage map of ISSR and RAPD markers in einkorn wheat in rel-ation to that of RFLP markers[J].Theoretical and Applied Genetics,1998,96:37-45.
[10]Ratnaparkhe M B,Santra D K,Tullu A,et al.Inheritance of inter-simple sequence rep-eat polymorphisms and linkage with a fusarium wilt resistance gene in chickpea[J].Theoretical and Applied Genetics,1998,96:348-353.
[11]何正文,刘运生,陈立华,等.正交设计直观分析法优化PCR条件[J].湖南医科大学学报,1998,23(4):403-404. [12]谢运海,夏德安,姜静.利用正交设计优化水曲柳ISSR-PCR反应体系[J].分子植物育种,2005(3):445-450.
[13]王彦华,侯喜林,徐明宇.正交设计优化不结球白菜ISSR反应体系研究[J].西北植物学报,2004,24(5):899-902.
[14]Bruno W S.High output genetic mapping of polyploids using PCR-Generated junkers[J].Theor.Appl.Genet.,1993,86:105-112.
[15]姜静,杨传平,刘桂丰,等.桦树ISSR-PCR反应体系的优化[J].生态学杂志,2003,22(3):91-93.
[16]刘威生,冯晨静,杨建民,等.杏ISSR反应体系的优化和指纹图谱的构建[J].果树学报,2005,22(6):626-629.

Memo

Memo:
-
Last Update: 2014-08-27